../../tmp/servers/virsirnadb/992262679
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi1822 | 1 | ctagtaacaccgtggaagt | 19 | |
| M33854.1 | CXA3CG Coxsackievirus B3 (CVB3) complete genome | 259 | ................... | 277 | 100 |
| M88483.1 | CXAB3CG Coxsackievirus B3 mRNA, complete genome | 260 | ................... | 278 | 100 |
| AF231764.1 | Coxsackievirus B3 strain P, complete genome | 260 | ................... | 278 | 100 |
| AF231765.1 | Coxsackievirus B3 strain PD, complete genome | 260 | ................... | 278 | 100 |
| AY752945.1 | Human coxsackievirus B3 strain 0, complete genome | 260 | ................... | 278 | 100 |
| AY752946.1 | Human coxsackievirus B3 strain 20, complete genome | 260 | ................... | 278 | 100 |
| AY752944.2 | Human coxsackievirus B3 strain 28, complete genome | 260 | ................... | 278 | 100 |
| AF231763.1 | Coxsackievirus B3 strain 31-1-93, complete genome | 260 | ..........t........ | 278 | 94 |
| AY036579.1 | Human echovirus 7 strain Wallace polyprotein gene, complete cds | 260 | ...........a....... | 278 | 94 |
| AF317694.1 | Human echovirus 18 strain Metcalf polyprotein gene, complete cds | 258 | ...........a....... | 276 | 94 |
| AF465516.1 | Human echovirus 7 strain Wallace, complete genome | 260 | ...........a....... | 278 | 94 |
| AY302543.1 | Human echovirus 17 strain CHHE-29 complete genome | 261 | ...........a....... | 279 | 94 |
| AY302546.1 | Human echovirus 20 strain JV-1 complete genome | 260 | ..............a.... | 278 | 94 |
| AY302556.1 | Human echovirus 33 strain Toluca-3 complete genome | 260 | ...........a....... | 278 | 94 |
| AY302559.1 | Human echovirus 7 strain Wallace complete genome | 260 | ...........a....... | 278 | 94 |
| AY843298.1 | Human enterovirus 80 strain USA/CA67-10387, complete genome | 261 | ...........a....... | 279 | 94 |
| EU147493.1 | Human coxsackievirus B1 isolate CVB1Nm polyprotein gene, complete cds | 259 | ...........a....... | 277 | 94 |
| EU703813.1 | Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/2, complete | 258 | ...........a....... | 276 | 94 |
| AY843308.1 | Human enterovirus 101 strain CIV03-10361, complete genome | 261 | _..........a....... | 278 | 89 |
| AF241359.1 | Enterovirus CA55-1988, complete genome | 262 | ...........a..a.... | 280 | 89 |
| AY302549.1 | Human echovirus 25 strain JV-4 complete genome | 259 | ...........a..a.... | 277 | 89 |
| AY302560.1 | Enterovirus 69 strain Toluca-1 complete genome | 262 | ...........a..a.... | 280 | 89 |
| AY556057.1 | Enterovirus 74 strain USA/CA75-10213, complete genome | 260 | ...........a..a.... | 278 | 89 |
| AY556070.1 | Enterovirus 75 strain USA/OK85-10362, complete genome | 266 | ...........a....g.. | 284 | 89 |
| AY896762.1 | Human enterovirus B strain CBV3-11059-99 from Uzbekistan polyprotein | 240 | ...........a..a.... | 258 | 89 |
| AY896763.1 | Human enterovirus B strain CBV3-18219-02 from Moldova polyprotein gen | 238 | ...........a..a.... | 256 | 89 |
| AB501329.1 | Human echovirus 13 gene for polyprotein, complete cds, strain: 2002-2 | 261 | ...........a....g.. | 279 | 89 |
| AB501330.1 | Human echovirus 13 gene for polyprotein, complete cds, strain: 2002-2 | 261 | ...........a....g.. | 279 | 89 |
| AB501331.1 | Human echovirus 13 gene for polyprotein, complete cds, strain: I5(1)- | 261 | ...........a....g.. | 279 | 89 |
| AB501332.1 | Human echovirus 13 gene for polyprotein, complete cds, strain: S3(1)- | 261 | ...........a....g.. | 279 | 89 |
| AF302996.1 | Enterovirus 71 strain SHZH98 polyprotein gene, complete cds | 261 | ...........a..a.... | 279 | 89 |
| AY465356.1 | Human enterovirus 71 strain SHZH03, complete genome | 258 | ...........a..a.... | 276 | 89 |
| AY421763.1 | Human coxsackievirus A5 strain Swartz, complete genome | 259 | ...........a..a.... | 277 | 89 |
| AY421769.1 | Human coxsackievirus A14 strain G-14, complete genome | 267 | ...........a..a.... | 285 | 89 |
| DQ133459.1 | Human enterovirus 71 strain 1235 polyprotein gene, complete cds | 258 | ...........a..a.... | 276 | 89 |
| EU703812.1 | Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/1, complete | 258 | ...........a..a.... | 276 | 89 |
| EU703814.1 | Human enterovirus 71 strain EV71/Fuyang.Anhui.P.R.C/17.08/3, complete | 258 | ...........a..a.... | 276 | 89 |
| EU864507.1 | Human enterovirus 71 isolate EV71/Zhejiang08, complete genome | 259 | ...........a..a.... | 277 | 89 |
| FJ158600.1 | Human enterovirus 71 isolate DTID/ZJU-62, complete genome | 258 | ...........a..a.... | 276 | 89 |
| FJ158601.1 | Human enterovirus 71 isolate DTID/ZJU-74, complete genome | 258 | ...........a..a.... | 276 | 89 |
| FJ194964.1 | Human enterovirus 71 strain EV71/GDFS/3/2008, complete genome | 258 | ...........a..a.... | 276 | 89 |
| FJ194965.1 | Human enterovirus 71 strain EV71/GDSG/17/2008, complete genome | 258 | ...........a..a.... | 276 | 89 |
| FJ360544.1 | Human enterovirus 71 isolate GZ-08-01, complete genome | 257 | ...........a..a.... | 275 | 89 |
| FJ360545.1 | Human enterovirus 71 isolate GZ-08-02, complete genome | 258 | ...........a..a.... | 276 | 89 |
| FJ360546.1 | Human enterovirus 71 isolate GZ-08-03, complete genome | 257 | ...........a..a.... | 275 | 89 |
| FJ439769.1 | Human enterovirus 71 strain Fuyang-0805, complete genome | 258 | ...........a..a.... | 276 | 89 |
| FJ606447.1 | Human enterovirus 71 strain BJ08-Z004-3, complete genome | 258 | ...........a..a.... | 276 | 89 |
| FJ606448.1 | Human enterovirus 71 strain BJ08-Z011-4, complete genome | 258 | ...........a..a.... | 276 | 89 |
| FJ606449.1 | Human enterovirus 71 strain BJ08-Z020-1, complete genome | 258 | ...........a..a.... | 276 | 89 |
| FJ606450.1 | Human enterovirus 71 strain BJ08-Z025-5, complete genome | 258 | ...........a..a.... | 276 | 89 |
| FJ713137.1 | Human enterovirus 71 strain Shanghai 036-2009, complete genome | 260 | ...........a..a.... | 278 | 89 |
| FJ828519.1 | Human enterovirus 71 isolate BJ08, complete genome | 237 | ...........a..a.... | 255 | 89 |
| FJ607334.1 | Human enterovirus 71 strain 1/SHENZHEN/08/China/HFMD/2008, complete g | 257 | ...........a..a.... | 275 | 89 |
| FJ607335.1 | Human enterovirus 71 strain 4/SHENZHEN/08/China/HFMD/2008, complete g | 257 | ...........a..a.... | 275 | 89 |
| FJ607336.1 | Human enterovirus 71 strain 28/SHENZHEN/08/China/HFMD/2008, complete | 256 | ...........a..a.... | 274 | 89 |
| FJ607337.1 | Human enterovirus 71 strain 121/SHENZHEN/08/China/HFMD Fatal/2008, co | 257 | ...........a..a.... | 275 | 89 |
| FJ607338.1 | Human enterovirus 71 strain 605/SHENZHEN/08/China/HFMD Severe/2008, c | 257 | ...........a..a.... | 275 | 89 |
| GQ892830.1 | Human enterovirus 71 strain GX/LZ 08-04/08/CHN, complete genome | 258 | ...........a..a.... | 276 | 89 |
| GQ994988.1 | Human enterovirus 71 strain Anhui1-09-China, complete genome | 258 | ...........a..a.... | 276 | 89 |
| GQ994989.1 | Human enterovirus 71 strain Chongqing1-09-China, complete genome | 259 | ...........a..a.... | 277 | 89 |
| GQ994990.1 | Human enterovirus 71 strain Chongqing2-09-China, complete genome | 258 | ...........a..a.... | 276 | 89 |
| GQ994991.1 | Human enterovirus 71 strain Chongqing3-09-China, complete genome | 258 | ...........a..a.... | 276 | 89 |
| GU366191.1 | Human enterovirus 71 strain Henan10-08-China, complete genome | 258 | ...........a..a.... | 276 | 89 |
| GU396280.1 | Human enterovirus 71 isolate EV71/Lanzhou01, complete genome | 258 | ...........a..a.... | 276 | 89 |
| GU459071.1 | Human enterovirus 71 isolate FY23-K14, complete genome | 258 | ...........a..a.... | 276 | 89 |
| HM003207.1 | Human enterovirus 71 strain 87-2008 Xi'an Shaanxi, complete genome | 258 | ...........a..a.... | 276 | 89 |
| GQ279370.1 | Human enterovirus 71 strain SZ/HK08-6, complete genome | 258 | ...........a..a.... | 276 | 89 |
| HM002484.1 | Human enterovirus 71 strain BJ67, complete genome | 258 | ...........a..a.... | 276 | 89 |
| HM002485.1 | Human enterovirus 71 strain BJ97, complete genome | 258 | ...........a..a.... | 276 | 89 |
| HM002486.1 | Human enterovirus 71 strain BJ110, complete genome | 259 | ...........a..a.... | 277 | 89 |
| HM002487.1 | Human enterovirus 71 strain BJ303, complete genome | 259 | ...........a..a.... | 277 | 89 |
| HM002489.1 | Human enterovirus 71 strain BJ398, complete genome | 259 | ...........a..a.... | 277 | 89 |
| HM053669.1 | Human enterovirus 71 strain BJ293, complete genome | 258 | ...........a..a.... | 276 | 89 |
| HM053670.1 | Human enterovirus 71 strain BJ393, complete genome | 258 | ...........a..a.... | 276 | 89 |
| HM053671.1 | Human enterovirus 71 strain BJ462, complete genome | 258 | ...........a..a.... | 276 | 89 |
| HQ407557.1 | Human enterovirus 71 strain LN009, complete genome | 258 | ...........a..a.... | 276 | 89 |
| HQ188292.1 | Human enterovirus 71 strain Fuyang-0805a, complete genome | 261 | ...........a..a.... | 279 | 89 |
| HQ426649.1 | Human enterovirus 71 strain 2010FJLY008, complete genome | 256 | ...........a..a.... | 274 | 89 |
| HQ325852.1 | Human enterovirus 71 strain EV71/HENAN/DC/2010, complete genome | 259 | ...........a..a.... | 277 | 89 |
| HQ891923.1 | Human enterovirus 71 strain Shanghai 27-2009, complete genome | 259 | ...........a..a.... | 277 | 89 |
| HQ891924.1 | Human enterovirus 71 strain Shanghai 28-2009, complete genome | 259 | ...........a..a.... | 277 | 89 |
| HQ891925.1 | Human enterovirus 71 strain Shanghai 36-2009, complete genome | 260 | ...........a..a.... | 278 | 89 |
| HQ891927.1 | Human enterovirus 71 strain Shanghai 64-2009, complete genome | 259 | ...........a..a.... | 277 | 89 |
| HQ891928.1 | Human enterovirus 71 strain Shanghai 117-2009, complete genome | 259 | ...........a..a.... | 277 | 89 |
| HQ891929.1 | Human enterovirus 71 strain Shanghai 118-2009, complete genome | 259 | ...........a..a.... | 277 | 89 |
| HQ400942.1 | Human enterovirus 71 HZ08/Hangzhou/2008, complete genome | 258 | ...........a..a.... | 276 | 89 |
| HQ423142.1 | Human enterovirus 71 strain KMM/09, complete genome | 258 | ...........a..a.... | 276 | 89 |
| HQ456305.1 | Human enterovirus A strain GZ2010-156, complete genome | 258 | ...........a..a.... | 276 | 89 |
| HQ456306.1 | Human enterovirus A strain GZ2010-134, complete genome | 258 | ...........a..a.... | 276 | 89 |
| HQ456307.1 | Human enterovirus A strain GZ2010-120, complete genome | 258 | ...........a..a.... | 276 | 89 |
| HQ456308.1 | Human enterovirus A strain GZ2010-118, complete genome | 258 | ...........a..a.... | 276 | 89 |
| HQ456309.1 | Human enterovirus A strain GZ08-831, complete genome | 258 | ...........a..a.... | 276 | 89 |
| HQ456310.1 | Human enterovirus A strain GZ08-530, complete genome | 258 | ...........a..a.... | 276 | 89 |
| HQ456311.1 | Human enterovirus A strain GZ08-522, complete genome | 258 | ...........a..a.... | 276 | 89 |
| HQ456312.1 | Human enterovirus A strain GZ08-520, complete genome | 258 | ...........a..a.... | 276 | 89 |
| HQ456313.1 | Human enterovirus A strain GZ2010-95, complete genome | 258 | ...........a..a.... | 276 | 89 |
| HQ611148.1 | Human enterovirus 71 strain AH08/06, complete genome | 258 | ...........a..a.... | 276 | 89 |
| JN001860.1 | Human enterovirus 71 strain NB/2010/01, complete genome | 259 | ...........a..a.... | 277 | 89 |
| U22522.1 | ETU22522 Human enterovirus 71 polyprotein gene, complete cds | 262 | .c.........a......_ | 279 | 84 |
| AJ586873.1 | Human enterovirus 71 gene for polyprotein, isolate EV71/9/97/SHA89 | 262 | ...........a.t...._ | 279 | 84 |
| AM396587.1 | Human enterovirus 71 gene for polyprotein, genomic RNA, isolate UH1/P | 262 | ...........a.t...._ | 279 | 84 |
| EU812515.1 | Human enterovirus 71 strain FY23 from China, complete genome | 262 | _..........a..a.... | 279 | 84 |
| GU459070.1 | Human enterovirus 71 isolate FY23-K12, complete genome | 262 | _..........a..a.... | 279 | 84 |
| AB575914.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 170 | 197 | .c.........a......_ | 214 | 84 |
| AB575917.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 101 | 214 | .c.........a......_ | 231 | 84 |
| AB575923.1 | Human enterovirus 71 gene for polyprotein, complete cds, isolate: 202 | 205 | .c.........a......_ | 222 | 84 |
| M16572.1 | CXA3G Coxsackievirus B3, complete genome | 259 | ..............a.___ | 274 | 78 |
| D00627.1 | CXA9CG Human coxsackievirus A9 genomic RNA, complete genome, strain: G | 261 | ...........a..a.g.. | 279 | 84 |
| S76772.1 | polyprotein [Coxsackie B4 virus CB4, host=mice, E2, originally derive | 262 | ...........a..a.c.. | 280 | 84 |
| AF039205.1 | Coxsackievirus B6 strain Schmitt, complete genome | 260 | .c.........a..a.... | 278 | 84 |
| AF105342.1 | Coxsackievirus B6 strain Schmitt, complete genome | 260 | .c.........a..a.... | 278 | 84 |
| AF114383.1 | Coxsackievirus B5 strain Faulkner, complete genome | 261 | .c.........a.....a. | 279 | 84 |
| AF114384.1 | Coxsackievirus B6 strain Schmitt, complete genome | 260 | .c.........a..a.... | 278 | 84 |
| AF311939.1 | Human coxsackievirus B4 strain E2 variant, complete genome | 262 | ...........a..a.c.. | 280 | 84 |
| AY302542.1 | Human echovirus 16 strain Harrington complete genome | 260 | ...........a..a.g.. | 278 | 84 |
| AY302544.1 | Human echovirus 19 strain Burke complete genome | 260 | .c.........a..a.... | 278 | 84 |
| AY302548.1 | Human echovirus 24 strain DeCamp complete genome | 260 | .c.........a..a.... | 278 | 84 |
| AJ577589.1 | Human echovirus 11, isolate HUN-1108, complete virion genome | 262 | ...........a..a.g.. | 280 | 84 |
| AJ577590.1 | Human echovirus 11, isolate FIN-0666, complete virion genome | 262 | ...........a..a.g.. | 280 | 84 |
| AJ577594.1 | Human echovirus 11, isolate ROU-9191, complete virion genome | 262 | ...........a..a.g.. | 280 | 84 |
| AY843300.1 | Human enterovirus 82 strain USA/CA64-10390, complete genome | 263 | .c.........a.a..... | 281 | 84 |
| AY843306.1 | Human enterovirus 88 strain BAN01-10398, complete genome | 262 | ...........a..a.g.. | 280 | 84 |
| AB426611.1 | Human enterovirus 97 genomic RNA, complete genome, strain: DT94-0227 | 260 | ...........a..a.g.. | 278 | 84 |
| HM775882.1 | Human echovirus 5 isolate Kor06-ECV5-253cn, complete genome | 259 | .c.........a..a.... | 277 | 84 |
| AY421762.1 | Human coxsackievirus A4 strain High Point, complete genome | 265 | .c.........a..a.... | 283 | 84 |
| GQ994992.1 | Human enterovirus 71 strain Henan2-09-China, complete genome | 250 | .c.........a..a.... | 268 | 84 |
| GQ279369.1 | Human enterovirus 71 strain SZ/HK08-5, complete genome | 258 | ...........a..a.g.. | 276 | 84 |
| HM002488.1 | Human enterovirus 71 strain BJ366, complete genome | 258 | ...........a..a..a. | 276 | 84 |
| HQ891926.1 | Human enterovirus 71 strain Shanghai 51-2009, complete genome | 259 | ...........a..a.g.. | 277 | 84 |
| X80059.1 | Echo Virus 11 genomic DNA | 262 | .........t.a..a.t.. | 280 | 78 |
| X84981.1 | Echovirus 9 (strain Hill), complete genome | 259 | .c.........a..a.g.. | 277 | 78 |
| U57056.1 | CXU57056 Coxsackievirus B3 Woodruff variant, complete genome | 260 | .c.........a.a..g.. | 278 | 78 |
| AF162711.1 | Echovirus 30 strain Bastianni, complete genome | 262 | ..........ta..a.c.. | 280 | 78 |
| AF311938.1 | Human echovirus 30 strain Bastianni, complete genome | 262 | ..........ta..a.c.. | 280 | 78 |
| AF328683.1 | Human coxsackievirus B4 polyprotein-like gene, complete sequence | 262 | .........t.a..a.c.. | 280 | 78 |
| AY843301.1 | Human enterovirus 83 strain USA/CA76-10392, complete genome | 260 | .c.........a..a.t.. | 278 | 78 |
| AY843305.1 | Human enterovirus 87 strain BAN01-10396, complete genome | 261 | .c.........a.a..g.. | 279 | 78 |
| EF634316.1 | Human echovirus 11 strain D207, complete genome | 263 | .c.........a..a.g.. | 281 | 78 |
| D90457.1 | CXA24CG Human coxsackievirus A24 DNA, complete genome | 4050 | ____...........tg.. | 4036 | 68 |
| AY302554.1 | Human echovirus 31 strain Caldwell complete genome | 2516 | ..........t..t.____ | 2530 | 68 |
| AF177911.1 | Coxsackievirus A16 polyprotein gene, complete cds | 4749 | .........t...a.____ | 4763 | 68 |
| AY790926.1 | Human coxsackievirus A16 strain shzh00-1, complete genome | 4749 | .........t...a.____ | 4763 | 68 |
| FJ172447.1 | Human echovirus 4 strain AUS250G, complete genome | 959 | _______..........._ | 969 | 57 |